1
Overview:
2
Before the course : reading and skills
2.1
Key papers on the Eddy Flux
2.2
Photosynthesis and the Farquhar, von Caemmerer, Berry model
2.3
Linking models and data
2.4
FolderRemote Sensing of GPP
2.5
A primer in Data Assimilation using MCMC
2.6
Where are the sources and sinks of Carbon around the globe?
2.7
Dave’s gentle introduction to MATLAB
3
Schedule
4
Weekend
5
Readings
5.1
Lecture PDFs
5.2
Gas Exchange
5.3
Photosynthesis to control volume
5.4
Eddy flux Instruments and data; uncertainty & organization
5.5
Asking questions with flux measurements - Remote Sensing
5.6
Intro to modeling
5.7
Combining models and data
5.8
Land surface modeling
6
Slides and Videos
6.1
2012
6.1.1
Pat Morgan:
Theory of Leaf-Level Gas Exchange Measurements 2012
6.1.2
Carl Bernachhi:
Chloroplast and Leaf-Level Flux Modeling
6.1.3
Paul Stoy:
Penman-Monteith Leaves to Canopies
6.1.4
Russ Monson:
Infamous stick lecture
6.1.5
Larry Jacobsen:
Eddy Covariance Instrumentation
6.1.6
George Burba:
Eddy Flux Instrumentation - Gas Analyzers
6.1.7
Marcy Litvak:
Fluxes Across Ecological Gradients 2012
6.1.8
Dan Yakir:
Stable Isotopes and Other Tracers to Complement Flux Measurements
6.1.9
Dave Bowling:
Stable Carbon Isotopes of Carbon Dioxide in Ecosystem Science
6.1.10
Dennis Baldocchi:
Integrating Information on ‘Biosphere Breathing’ from Chloroplast to the Globe
6.1.11
Dave Moore:
Combining Models with Data: Models, Validation and Data Assimilation
6.1.12
Tristan Quaife:
Remote Sensing for Carbon Cycle Science 2012
6.1.13
John Zobitz:
A Hitchhiker’s Guide to Data Assimilation in the Ecological Sciences
6.1.14
Dave Moore:
Data Assimilation Using Ecosystem Models
6.1.15
Mike Dietz & Ankur Desai:
The PEcAn Project: Feedbacks Between Models and Data
6.1.16
Dave Schimel:
Chalk Talk 2012 - The Global Carbon Cycle
6.1.17
Deborah Huntzinger:
Regional Estimates of Land-Atmosphere Carbon Exchange
6.1.18
Rosie Fisher:
The Representation of Space and Stochasticity in Dynamic Global Vegetation Models
6.1.19
Andy Fox:
Informing Land Surface Models with Data - Scaling from Sites to the Continent
6.2
2013
6.2.1
Diane Pataki:
What’s the Big Deal About Isotopes Anyway?
6.2.2
Ray Leuning:
Introduction To Measuring Fluxes Over Land Using Eddy Covariance
6.2.3
Dario Papale:
When Collaboration Makes the Difference: Examples From FLUXNET
6.2.4
Ray Leuning:
Communicating Science with the Public
6.2.5
Russ Monson:
Eddy Flux Measurements in Complex Terrain: the Ogre in the Closet
6.3
2015
6.3.1
Andrew Leakey:
Measurement, analysis and interpretation of leaf photosynthetic gas exchange
6.3.2
James Kathilankal:
Gas Analyzers, Theory and Maintenance, and Site Intercomparisons
6.3.3
Kim Novick:
Energy Balance and Evapotanspiration
6.3.4
Russ Monson:
C4 Photosynthesis: A Historical Perspective and Associated General Lessons in Science
6.3.5
Pat Morgan:
Theory of Leaf-Level Gas Exchange Measurements 2015
6.3.6
Ankur Desai:
You have NEE: Now what?
6.3.7
Marcy Litvak:
Fluxes Across Ecological Gradients 2015
6.3.8
Ed Swiatek:
Eddy Covariance Instrumentation
6.3.9
Tristan Quaife:
Remote Sensing for Carbon Cycle Science 2015
6.3.10
Russ Monson:
The Eddy Flux
7
Exercises
7.1
Fitting Ac-Ci Curves
7.1.1
Setup
7.1.2
Loading data
7.1.3
QA/QC Checks
7.2
Stomatal Conductance Modeling Exercise:
7.2.1
Leuning
7.2.2
Hydraulic Model
7.2.3
Optimality Model
Annual Summer Course in Flux Measurements and Modelling
6
Slides and Videos
6.1
2012
6.1.1
Pat Morgan:
Theory of Leaf-Level Gas Exchange Measurements 2012
6.1.2
Carl Bernachhi:
Chloroplast and Leaf-Level Flux Modeling
6.1.3
Paul Stoy:
Penman-Monteith Leaves to Canopies
6.1.4
Russ Monson:
Infamous stick lecture
6.1.5
Larry Jacobsen:
Eddy Covariance Instrumentation
6.1.6
George Burba:
Eddy Flux Instrumentation - Gas Analyzers
6.1.7
Marcy Litvak:
Fluxes Across Ecological Gradients 2012
6.1.8
Dan Yakir:
Stable Isotopes and Other Tracers to Complement Flux Measurements
6.1.9
Dave Bowling:
Stable Carbon Isotopes of Carbon Dioxide in Ecosystem Science
6.1.10
Dennis Baldocchi:
Integrating Information on ‘Biosphere Breathing’ from Chloroplast to the Globe
6.1.11
Dave Moore:
Combining Models with Data: Models, Validation and Data Assimilation
6.1.12
Tristan Quaife:
Remote Sensing for Carbon Cycle Science 2012
6.1.13
John Zobitz:
A Hitchhiker’s Guide to Data Assimilation in the Ecological Sciences
6.1.14
Dave Moore:
Data Assimilation Using Ecosystem Models
6.1.15
Mike Dietz & Ankur Desai:
The PEcAn Project: Feedbacks Between Models and Data
6.1.16
Dave Schimel:
Chalk Talk 2012 - The Global Carbon Cycle
6.1.17
Deborah Huntzinger:
Regional Estimates of Land-Atmosphere Carbon Exchange
6.1.18
Rosie Fisher:
The Representation of Space and Stochasticity in Dynamic Global Vegetation Models
6.1.19
Andy Fox:
Informing Land Surface Models with Data - Scaling from Sites to the Continent
6.2
2013
6.2.1
Diane Pataki:
What’s the Big Deal About Isotopes Anyway?
6.2.2
Ray Leuning:
Introduction To Measuring Fluxes Over Land Using Eddy Covariance
6.2.3
Dario Papale:
When Collaboration Makes the Difference: Examples From FLUXNET
6.2.4
Ray Leuning:
Communicating Science with the Public
6.2.5
Russ Monson:
Eddy Flux Measurements in Complex Terrain: the Ogre in the Closet
6.3
2015
6.3.1
Andrew Leakey:
Measurement, analysis and interpretation of leaf photosynthetic gas exchange
6.3.2
James Kathilankal:
Gas Analyzers, Theory and Maintenance, and Site Intercomparisons
6.3.3
Kim Novick:
Energy Balance and Evapotanspiration
6.3.4
Russ Monson:
C4 Photosynthesis: A Historical Perspective and Associated General Lessons in Science
6.3.5
Pat Morgan:
Theory of Leaf-Level Gas Exchange Measurements 2015
6.3.6
Ankur Desai:
You have NEE: Now what?
6.3.7
Marcy Litvak:
Fluxes Across Ecological Gradients 2015
6.3.8
Ed Swiatek:
Eddy Covariance Instrumentation
6.3.9
Tristan Quaife:
Remote Sensing for Carbon Cycle Science 2015
6.3.10
Russ Monson:
The Eddy Flux